Alignment analysis based on information content

Please indicate who you are:

Please select the alignment format, and enter the alignment:

FASTA
MEGA
PAUP
PHYLIP
YAMA

or provide the (Unix - full path) file name for the alignment:

or select one of the pre-formatted alignments from the list:

Please enter the name of the sequence to provide the range:

Please enter the range in the above sequence for evaluating the alignment - from: to

Please enter the name: , or the number: of the sequence in which to count positions.

Please indicate the subtraction method for the information content:

average info content based on the entire alignment
average info content based on relevant columns only
no average info content for subtraction

Please enter the additional modifier value for the info content score:.

Minimal region length should be: in at least: active sequences.

The gaps should be treated as:

breaking any region of conformation
any other character in the alignment
non-existant

Please indicate the result output:

list
image_postscript
image_pdf

After entering data, click on to locate the high information content sites, or on to clear the entries.