Nha Nguyen, Heng Huang, Soontorn Oraintara, An Vo. A Novel Method For Array-CGH Data Smoothing, Journal of Computational Biology, accepted to appear.

Nha Nguyen, Heng Huang, Soontorn Oraintara, An Vo. Peak Detection in Mass Spectrometry by Gabor Filters and Envelope Analysis, Journal of Bioinformatics and Computational Biology, Vol. 7, No. 3, pp. 547-569, 2009.

Heng Huang, Nha Nguyen, Soontorn Oraintara, An Vo. Array CGH Data Modeling and Smoothing in Stationary Wavelet Packet Transform Domain, BMC Genomics, Vol. 9 (S2:S17), 2008 (Impact Factor: 4.18).

Heng Huang, Li Shen, James Ford, Yuhang Wang, Yurong Xu. Computational Issues in Biomedical Nanometrics and Nano-materials, Journal of Nano Research, Vol. 1, pp. 50-58, 2008.

Heng Huang, Li Shen, Nha Nguyen. Three Dimensional Models for Cardiac Bioelectricity Simulation: Cell to Organ, Simulation: Transactions of The Society for Modeling and Simulation International, Vol. 83, No. 4, pp. 321-327, 2007.

Heng Huang, Li Shen, Fillia Makedon, Andy Saykin, Justin Pearlman. A Novel Surface Registration Algorithm with Biomedical Modeling Applications, IEEE Transactions on Information Technology in BioMedicine,Volume 11, Issue 4, pp. 474-482, 2007.

Heng Huang, Li Shen, Fillia Makedon, Bruce Hettleman, Justin Pearlman. Cardiac Motion Analysis to Improve Pacing Site Selection in CRT, Academic Radiology, Elsevier Science, Volume 13, Issue 9, pp. 1124-1134, September 2006.

Heng Huang, Li Shen, James Ford, Ling Gao, Justin Pearlman. Early lung cancer detection based on registered perfusion MRI. Journal of Oncology Reports, Volume 15, pp. 1080-1084, 2005.

Li Shen, Wei Zheng, Ling Gao, Heng Huang, Fillia Makedon, and Justin Pearlman. Spatio-Temporal Modeling of Lung Images for Cancer Detection. Journal of Oncology Reports, Volume 15, pp. 1085-1089, 2005.

Dijun Luo, Chris Ding, Heng Huang. Non-negative Laplacian Embedding, IEEE International Conference on Data Mining (ICDM 2009), accepted to appear, (acceptance rate for regular paper 8.9%, 70/786).

Hua Wang, Heng Huang, Chris Ding. Image Annotation Using Multi-label Correlated Green's Function, IEEE Conference on Computer Vision (ICCV 2009), pp. 1-8.

Dijun Luo, Chris Ding, Heng Huang. Symmetric Two Dimensional Linear Discriminant Analysis (2DLDA), IEEE Conference on Computer Vision and Pattern Recognition (CVPR 2009), pp. 1-8.

Dijun Luo, Heng Huang. Link Prediction of Multimedia Social Network via Unsupervised Face Recognition, ACM International Conference on Multimedia, accepted to appear, 2009.

Vangelis Metsis, Heng Huang, Fillia Makedon, Aria Tzika, Heterogeneous Data Fusion to Type Brain Tumor Biopsies, the proceedings of the 5th IFIP Conference on Artificial Intelligence Applications & Innovations (AIAI 2009), accepted to appear, 2009.

Heng Huang, Chris Ding, Dijun Luo, Tao Li. Simultaneous Tensor Subspace Selection and Clustering: The Equivalence of High Order SVD and K-Means Clustering. The 14th ACM SIGKDD International Conference on Knowledge Discovery and Data Mining (KDD 2008), pp. 327-335 (acceptance rate for long paper 9.8%, 50/510).

Nha Nguyen, Heng Huang, Soontorn Oraintara, An Vo. GABORLOCAL: Peak Detection In Mass Spectrum By Gabor Filters And Gaussian Local Maxima. Computational Systems Bioinformatics Conference (CSB 2008), pp. 85-96 (acceptance rate for full paper 22%).

Nha Nguyen, Heng Huang, Soontorn Oraintara, An Vo. Dependent Laplacian Bivariate Shrinkage Estimator For SWPT Based Array-CGH Data Smoothing. Computational Systems Bioinformatics Conference (CSB 2008), poster.

Heng Huang, Chris Ding. Robust Tensor Factorization Using R1 Norm. IEEE Conference on Computer Vision and Pattern Recognition (CVPR 2008), pp. 1-8.

Chris Ding, Heng Huang, Dijun Luo. Tensor Reduction Error Analysis -- Applications to Video Compression and Classification. IEEE Conference on Computer Vision and Pattern Recognition (CVPR 2008), pp. 1-8.

Heng Huang, Fillia Makedon. Statistical Shape Model Using High Dimensional Feature Selection, IEEE International Symposium on Biomedical Imaging: From Nano to Macro (ISBI 2008), pp. 1541-1544.

Nha Nguyen, Heng Huang, Soontorn Oraintara, Yuhang Wang. Denoising of Array-Based DNA Copy Number Data Using The Dual-tree Complex Wavelet Transform. IEEE 7th International Symposium on Bioinformatics & Bioengineering (BIBE 2007), pp. 137-144 (acceptance rate for full paper < 12%, 60/500+).

Li Shen, Andrew J. Saykin, Moo K. Chung, Heng Huang. Morphometric Analysis of Hippocampal Shape in Mild Cognitive Impairment: An Imaging Genetics Study. IEEE 7th International Symposium on Bioinformatics & Bioengineering (BIBE 2007), pp. 211-217 (acceptance rate for full paper < 12%, 60/500+).

Nha Nguyen, Heng Huang, Soontorn Oraintara, An Vo. A New Smoothing Model for Analyzing Array CGH Data. IEEE 7th International Symposium on Bioinformatics & Bioengineering (BIBE 2007), pp. 1027-1034.

Heng Huang, Li Shen. Surface Harmonics for Shape Modeling. ICIP 2007: 14th IEEE International Conference on Image Processing, Volume 2, pp. 553-556.

Li Shen, Heng Huang, Fillia Makdeon, and Andrew J. Saykin. Efficient Registration of 3D SPHARM Surfaces. CRV 2007: Fourth Canadian Conference on Computer and Robot Vision, pp. 81-88 (acceptance rate for oral 24%, 25/103).

Chris Hawblitzel, Heng Huang, Lea Wittie, Juan Chen. A garbage-collecting typed assembly language. TLDI 2007, ACM SIGPLAN International Workshop on Types in Languages Design and Implementation, pp. 41-52.

Heng Huang, Fillia Makedon, Dan Popa, Harry Stephanou, James Ford, Yurong Xu. A Feature Extraction Method for Multimedia Data Analysis in Robot Wireless Sensor Networks. WIAMIS 2007: 8th International Workshop on Image Analysis for Multimedia Interactive Services, to appear.

Yurong Xu, James Ford, Fillia Makedon, Dan Popa, Heng Huang, Li Shen. In-home Localization for Home Care of Alzheimer's Disease Patients using Wireless Sensor Networks. International workshop on Pervasive Technologies for the support of Alzheimer's Disease and Related Disorders Sufferers, to appear.

Heng Huang, Lei Zhang, Dimitris Samaras, Li Shen, Fillia Makedon, Justin Pearlman. Hemispherical Harmonic Surface Description and Applications to Medical Image Analysis. TDPVT 2006, IEEE Symposium on 3D Data Processing, Visualization and Transmission, pp. 381-388 (acceptance rate for oral 15%, 28/183).

Heng Huang, Li Shen, Fillia Makedon, Justin Pearlman. A Spatio-Temporal Modeling Method for Shape RepresentationA Spatio-temporal Modeling for Shape Representation. TDPVT 2006, IEEE Symposium on 3D Data Processing, Visualization and Transmission, pp. 1034-1040.

Heng Huang, Li Shen, Rong Zhang, Fillia Makedon, Bruce Hettleman, Justin Pearlman. Fast Surface Reconstruction for Ischemic Cardiac Spatio-temporal Modeling. SPIE Medical Imaging 2006: Image Processing, Proceedings of SPIE, Volume 6144, pp. 1002-1009, 2006.

Li Shen, Andrew Saykin, Moo Chung, Heng Huang, James Ford, Fillia Makedon, Tara McHugh, Harker Rhodes. Morphometric Analysis of Genetic Variation in Hippocampal Shape in Mild Cognitive Impairment: Role of an IL-6 Promoter Polymorphism. CSB 2006: LSS Computational Systems Bioinformatics Conference, accepted to appear.

Li Shen, Heng Huang, Joshua Lu, James Ford, Ling Gao, Wei Zheng, Fillia Makedon, Justin Pearlman. Spatio-Temporal Analysis Tool for Modeling Pulmonary Nodules in MR Images. SPIE Medical Imaging 2006: Visualization, Image Guided Procedures, and Display, Proceedings of SPIE, Volume 6144, pp. 740-749, 2006.

Heng Huang, Li Shen, Rong Zhang, Fillia Makedon, Bruce Hettleman, Justin Pearlman. Surface Alignment of 3D Spherical Harmonic Models: Application to Cardiac MRI Analysis. MICCAI 2005, 8th International Conference on Medical Image Computing and Computer Assisted Intervention.Lecture Notes in Computer Science LNCS 3749, Springer Verlag, pp. 67-74. (acceptance rate for oral 7%, 46/632)

Heng Huang, Li Shen, Rong Zhang, Fillia Makedon, Bruce Hettleman, Justin Pearlman. A Prediction Framework for Cardiac Resynchronization Therapy via 4D Cardiac Motion Analysis. MICCAI 2005, 8th International Conference on Medical Image Computing and Computer Assisted Intervention. Lecture Notes in Computer Science LNCS 3749, Springer Verlag, pp. 704-711.

Heng Huang, Rong Zhang, Fei Xiong, Fillia Makedon, Li Shen, Bruce Hettleman, Justin Pearlman. K-means+ Method for Improving Gene Selection for Classification of Microarray Data. CSB 2005, IEEE Computational Systems Bioinformatics Conference, pp. 110-111, 2005.

Heng Huang, Li Shen, Fillia Makedon, Sheng Zhang, Mark Greenberg, Ling Gao, Justin Pearlman. A Clustering-based Approach for Prediction of Cardiac Resynchronization Therapy. SAC 2005, 20th ACM Symposium on Applied Computing, pp. 260-266, 2005.

Heng Huang, Li Shen, James Ford, Fillia Makedon, Ling Gao, Justin Pearlman. Functional Analysis of Cardiac MR Images Using SPHARM Modeling. SPIE Medical Imaging 2005: Image Processing, Proceedings of SPIE, Volume 5747, pp. 1384-1391, 2005.

Fei Xiong, Heng Huang, James Ford, Fillia Makedon, Justin Pearlman. A New Test System for Stability Measurement of Marker Gene Selection in DNA Microarray Data Analysis. PCI 2005, 10th Panhellenic Conference on Informatics, Lecture Notes in Computer Science LNCS 3746, Springer Verlag, pp. 437-447.

Li Shen, Wei Zheng, Ling Gao, Heng Huang, Fillia Makedon, Justin Pearlman. Modeling Time-Intensity Profiles for Pulmonary Nodules in MR Images. EMBS 2005, The 27th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2005.

Li Shen, Ling Gao, Zhenwu Zhuang, Ebo DeMuinck, Heng Huang, Fillia Makedon, Justin Pearlman. An interactive 3D visualization and manipulation tool for effective assessment of angiogenesis and arteriogenesis using computed tomographic angiography. SPIE Medical Imaging 2005, San Diego, California, 12-17 February 2005.

Heng Huang, Fillia Makedon, Justin Pearlman, James Ford, Li Shen, Yuhang Wang, Ling Gao. Efficient Similarity Retrieval for Temporal Shape Sequences: A Case Study using Cardiac MR Images. Proceedings of 26th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBS), Volume 2, pp. 3250-3253, 2004.

Heng Huang, Li Shen, Fillia Makedon, Ling Gao, Justin Pearlman. Three-Dimensional Analysis of Cardiac Magnetic Resonance Imaging using Spherical Harmonics Model. ACC'04, March 7-10, 2004, New Orleans, Supplement to the Journal of the American College of Cardiology, Volume 43, Number 5 (Supplement A), 2004.

Yuhang Wang, Fillia Makedon, James Ford, Heng Huang. A bipartite graph matching framework for finding correspondences between structural elements in two proteins. Proceedings of 26th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBS), Volume 2, pp. 2972-2975, 2004.

Chris Hawblitzel, Edward Wei, Heng Huang, Eric Krupski, Lea Wittie. Low-Level Linear Memory Management. SPACE 2004, the Second ACM SIGPLAN Workshop on Semantics, Program Analysis, and Computing Environments for Memory Management, 2004.